G::Tools KEGG_API
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentationMethods
Summary
G::Tools::KEGG_API - Perl extension for blah blah blah
Package variables
Globals (from "use vars" definitions)
@EXPORT
Privates (from "my" definitions)
$url = 'http://soap.genome.ad.jp/KEGG.wsdl'
Included modules
SOAP::Lite
Inherit
AutoLoader Exporter
Synopsis
    use G::Tools::KEGG_API;
  blah blah blah
Description
Stub documentation for G::Tools::KEGG_API was created by h2xs. It looks like the
author of the extension was negligent enough to leave the stub
unedited.
Blah blah blah.
Methods
color_pathway_by_compounds
No description
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color_pathway_by_enzymes
No description
Code
color_pathway_by_genes
No description
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get_aaseqs
No description
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get_all_genes_by_organism
No description
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get_all_neighbors_by_gene
No description
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get_best_best_homologs_by_genes
No description
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get_best_best_neighbors_by_gene
No description
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get_best_homologs_by_genes
No description
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get_best_neighbors_by_gene
No description
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get_common_motifs_by_genes
No description
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get_compounds_by_pathway
No description
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get_definition_by_gene
No description
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get_entries
No description
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get_enzymes_by_pathway
No description
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get_enzymes_by_reactions
No description
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get_genes_by_enzymes
No description
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get_genes_by_motifs
No description
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get_genes_by_pathway
No description
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get_ntseqs
No description
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get_num_genes_by_organism
No description
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get_paralogs_by_gene
No description
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get_pathways_by_compounds
No description
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get_pathways_by_enzymes
No description
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get_pathways_by_genes
No description
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get_pathways_by_reactions
No description
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get_reactions_by_pathways
No description
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get_reverse_best_neighbors_by_gene
No description
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get_score_between_genes
No description
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load_kegg_api
No description
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mark_all_pathways_by_compounds
No description
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mark_all_pathways_by_enzymes
No description
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mark_all_pathways_by_genes
No description
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mark_pathway_by_compounds
No description
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mark_pathway_by_enzymes
No description
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mark_pathway_by_genes
No description
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new
No description
Code
Methods description
None available.
Methods code
color_pathway_by_compoundsdescriptionprevnextTop
sub color_pathway_by_compounds {
    shift @_;
    my $response = SOAP::Lite->service("$url")->color_pathway_by_compounds(@_);
    return $response;
}
color_pathway_by_enzymesdescriptionprevnextTop
sub color_pathway_by_enzymes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->color_pathway_by_enzymes(@_);
    return $response;
}
color_pathway_by_genesdescriptionprevnextTop
sub color_pathway_by_genes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->color_pathway_by_genes(@_);
    return $response;
}
get_aaseqsdescriptionprevnextTop
sub get_aaseqs {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_aaseqs(@_);
    return $response;
}
get_all_genes_by_organismdescriptionprevnextTop
sub get_all_genes_by_organism {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_all_genes_by_organism(@_);
    return $response;
}
get_all_neighbors_by_genedescriptionprevnextTop
sub get_all_neighbors_by_gene {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_all_neighbors_by_gene(@_);
    return $response;
}
get_best_best_homologs_by_genesdescriptionprevnextTop
sub get_best_best_homologs_by_genes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_best_best_homologs_by_genes(@_);
    return $response;
}
get_best_best_neighbors_by_genedescriptionprevnextTop
sub get_best_best_neighbors_by_gene {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_best_best_neighbors_by_gene(@_);
    return $response;
}
get_best_homologs_by_genesdescriptionprevnextTop
sub get_best_homologs_by_genes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_best_homologs_by_genes(@_);
    return $response;
}
get_best_neighbors_by_genedescriptionprevnextTop
sub get_best_neighbors_by_gene {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_best_neighbors_by_gene(@_);
    return $response;
}
get_common_motifs_by_genesdescriptionprevnextTop
sub get_common_motifs_by_genes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_common_motifs_by_genes(@_);
    return $response;
}
get_compounds_by_pathwaydescriptionprevnextTop
sub get_compounds_by_pathway {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_compounds_by_pathway(@_);
    return $response;
}
get_definition_by_genedescriptionprevnextTop
sub get_definition_by_gene {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_definition_by_gene(@_);
    return $response;
}
get_entriesdescriptionprevnextTop
sub get_entries {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_entries(@_);
    return $response;
}
get_enzymes_by_pathwaydescriptionprevnextTop
sub get_enzymes_by_pathway {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_enzymes_by_pathway(@_);
    return $response;
}
get_enzymes_by_reactionsdescriptionprevnextTop
sub get_enzymes_by_reactions {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_enzymes_by_reactions(@_);
    return $response;
}
get_genes_by_enzymesdescriptionprevnextTop
sub get_genes_by_enzymes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_genes_by_enzymes(@_);
    return $response;
}
get_genes_by_motifsdescriptionprevnextTop
sub get_genes_by_motifs {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_genes_by_motifs(@_);
    return $response;
}
get_genes_by_pathwaydescriptionprevnextTop
sub get_genes_by_pathway {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_genes_by_pathway(@_);
    return $response;
}
get_ntseqsdescriptionprevnextTop
sub get_ntseqs {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_ntseqs(@_);
    return $response;
}
get_num_genes_by_organismdescriptionprevnextTop
sub get_num_genes_by_organism {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_num_genes_by_organism(@_);
    return $response;
}
get_paralogs_by_genedescriptionprevnextTop
sub get_paralogs_by_gene {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_paralogs_by_gene(@_);
    return $response;
}
get_pathways_by_compoundsdescriptionprevnextTop
sub get_pathways_by_compounds {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_pathways_by_compounds(@_);
    return $response;
}
get_pathways_by_enzymesdescriptionprevnextTop
sub get_pathways_by_enzymes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_pathways_by_enzymes(@_);
    return $response;
}
get_pathways_by_genesdescriptionprevnextTop
sub get_pathways_by_genes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_pathways_by_genes(@_);
    return $response;
}
get_pathways_by_reactionsdescriptionprevnextTop
sub get_pathways_by_reactions {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_pathways_by_reactions(@_);
    return $response;
}
get_reactions_by_pathwaysdescriptionprevnextTop
sub get_reactions_by_pathways {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_reactions_by_pathways(@_);
    return $response;
}
get_reverse_best_neighbors_by_genedescriptionprevnextTop
sub get_reverse_best_neighbors_by_gene {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_reverse_best_neighbors_by_gene(@_);
    return $response;
}
get_score_between_genesdescriptionprevnextTop
sub get_score_between_genes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->get_score_between_genes(@_);
    return $response;
}
load_kegg_apidescriptionprevnextTop
sub load_kegg_api {
    return G::Tools::KEGG_API->new();
}
mark_all_pathways_by_compoundsdescriptionprevnextTop
sub mark_all_pathways_by_compounds {
    shift @_;
    my $response = SOAP::Lite->service("$url")->mark_all_pathways_by_compounds(@_);
    return $response;
}
mark_all_pathways_by_enzymesdescriptionprevnextTop
sub mark_all_pathways_by_enzymes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->mark_all_pathways_by_enzymes(@_);
    return $response;
}
mark_all_pathways_by_genesdescriptionprevnextTop
sub mark_all_pathways_by_genes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->mark_all_pathways_by_genes(@_);
    return $response;
}
mark_pathway_by_compoundsdescriptionprevnextTop
sub mark_pathway_by_compounds {
    shift @_;
    my $response = SOAP::Lite->service("$url")->mark_pathway_by_compounds(@_);
    return $response;
}
mark_pathway_by_enzymesdescriptionprevnextTop
sub mark_pathway_by_enzymes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->mark_pathway_by_enzymes(@_);
    return $response;
}
mark_pathway_by_genesdescriptionprevnextTop
sub mark_pathway_by_genes {
    shift @_;
    my $response = SOAP::Lite->service("$url")->mark_pathway_by_genes(@_);
    return $response;
}
newdescriptionprevnextTop
sub new {
    my $pkg = shift;
    my $self = {};
    return bless ($self,$pkg);
}
General documentation
AUTHORTop
A. U. Thor, a.u.thor@a.galaxy.far.far.away
SEE ALSOTop
perl(1).