Method 
pseudo_atg  
 
Classpackage  
G::Seq::ORF 
 
 
Function 
Gets the upstream and downstream sequence from "pseudo ATG", ATG codon that is not a start codon. 
 
Description 
-------------------------------------------- 
 
Requirements 
modules   
SubOpt.pm 
 
applications 
none 
 
data 
none 
 
Parameters 
essential 
 
first     pointer   G instance      G's instance 
 
 
option 
length   length_of_sequence   default=50  
 
Returns 
first     pointer    array_upstream_seq     pointer of upstream sequence 
second    pointer    array_downstream_seq   pointer of downstream sequence 
 
Usage 
(pointer array_upstream_seq, pointer array_downstream_seq)&pseudo_atg(pointer G instance, -length=>'50');  
 
Input file  
none 
 
 
Output file  
none 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Kazuharu Arakawa(gaou@g-language.org) at Institute for Advanced Biosciences Keio Univ.  
 
 
History