Method 
palindrome 
 
Classpackage  
G::Seq::PatSearch; 
 
Function 
Searches for palindrome sequences 
 
Description 
--------------------------------- 
 
Requirements 
modules   
SubOpt.pm 
sub_match_test() 
 
applications 
none 
 
data 
none 
 
Parameters 
essential 
 
first     pointer   G instance     G's instance 
 
 
 
option 
shortest int      shortest palindrome to search    default= 4 
loop     int      longest stem loop to allow       default= 0 
gtmatch  boolean  [1 or 0] if 1, allows g-t match  default= 0 
output   string   [f or stdout]                    default= stdout  
 
Returns 
none 
 
Usage 
&palindrome(pointer G instance -gtmatch=>0, -loop=>0, -shortest=>4,  
 
-output=>"stdout");  
 
Input file  
none 
 
 
Output file  
csv file in text format 
 
References 
none  
 
Comments 
none 
 
Authors 
 
This method was written by Kazuharu Arakawa(gaou@g-language.org) at  
Institute for Advanced Biosciences Keio Univ.  
 
 
History 
Written 29 August  2001 - Kazuharu Arakawa