Method 
foreach_mask_repeat 
 
Classpackage  
G::Tools::Mapping; 
 
 
Function 
Runs mask_repeat for each query file in the specified directory. 
 
Description 
This method runs mask_repeat for files in the same directory.   
Be aware that this program requires a lot of time to be executed.  
 
Requirements 
SubOpt.pm 
 
applications 
Repeat Masker 
 
data 
none 
 
Parameters 
essential 
 
first     string   query       The pass of the directory where the query  
 
files are placed 
 
 
 
option 
first     string    -lib    the library for RepeatMasker   default=human transposons 
 
Returns 
none 
 
Usage 
&foreach_mask_repeat( string optional_lib, string query_directory); 
 
Input file  
none 
 
 
Output file  
none 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Koya Mori(Mory@g-language.org) at Institute for  
 
Advanced Biosciences Keio Univ.  
 
 
History 
Written 8/17   - Koya Mori