Method 
find_seq 
 
Classpackage  
G::Seq::PatSearch; 
 
 
Function 
Counts an oligomer and its complement 
 
Description 
---------------------------------------- 
 
Requirements 
modules   
SubOpt.pm 
 
applications 
none 
 
data 
none 
 
Parameters 
essential 
 
first     pointer   GENOME    G's instance 
second    string    Seq       ????? 
third     boolean   debug     debug option 
 
option 
none 
 
Returns 
first     Int     direct     ????? 
second    int     comp       ????? 
third     int     total      ????? 
 
Usage 
 (Int direct, int comp, int total) = &find_seq(pointer GENOME, string Seq); 
 
Input file  
none 
 
 
Output file  
csv file in text format (oligomer_count.rst) 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Kazuharu Arakawa(gaou@g-language.org) at Institute for Advanced Biosciences Keio Univ.  
 
 
History 
Written 26 March   2001 - Kazuharu Arakawa