Method 
find_bad_substance 
 
Classpackage  
G::Ecell::Pathway; 
 
 
Function 
Finds bad substances from e-cell rule files 
 
Description 
This method reads in a eri file of e-cell, and finds substances which exist 
even though there are no inputs.   
This method requires files such as the substance list of the membrane. 
 
Requirements 
none 
 
applications 
none 
 
data 
none 
 
Parameters 
essential 
 
first     string   whole.eri                   array of base result 
second    string   Membrane_reaction.txt       text file of membrane reaction 
third     string   Analyzed_reaction.txt       text file of analyzed reaction 
 
option 
none 
 
Returns 
first   variable        substance_list  pointer of array 
Usage 
(array substance_list)=&find_bad_substance(string whole.eri,  string Membrane_reaction.txt,   string Analyzed_reaction.txt); 
 
Input file  
e-cell rule file 
text file of analyzed reaction 
text file of membrane reaction 
 
Output file  
none 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Koya Mori(Mory@g-language.org) at Institute for b 
Advanced Biosciences Keio Univ.  
 
 
History 
Written 25 May  2001 - Koya Mori