cutquery 
 
Classpackage  
G::Tools::Mapping; 
 
 
Function 
Prepares the query file by dividing the long Fasta file to short files per  
 
every gene 
 
Description 
This program prepares the query file be dividing a long Fasta file into shorter files, each with the information 
of one gene.  This program can only work on Fasta files.  The created files are outputted in the directory. 
 
Requirements 
SubOpt.pm 
 
applications 
 
data 
none 
 
Parameters 
essential 
first      string   query_filename        The filename of the query file 
second     string   query_directory       The pass of the directory where  
 
the query file is placed 
 
 
 
option 
none 
 
Returns 
none 
 
Usage 
&cutquery(string query_filename, string query_directory); 
 
Input file  
Query sequence in fasta format 
 
Output file  
divided query sequence in fasta format 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Hiromi Komai(hiro@g-language.org) at Institute  
 
for Advanced Biosciences Keio Univ.  
 
 
History