Method 
base_relative_entropy  
 
Classpackage  
G::Seq::Consensus; 
 
 
Function 
Calculates the relative entropy of base_counter 
 
 
Description 
By recieving the returned result of the base_counter,  
this method calculates the relative entropy around the start/end codon. 
The relative entropy is calculated per position from the start/end codon. 
 
 
Requirements 
modules   
SubOpt.pm 
&G::Tools::Graph::_UniUniGrapher 
 
applications 
none 
 
data 
none 
 
Parameters 
essential 
 
first   pointer   G_instance          G's instance 
 
option 
output    string  [stdout/f/g/show]    default=show  
filename  string  file_name            default=consensus.csv   
PatLength int     pattern_length       default=3  
upstream  int     upstream             default=30  
downstream int    downstream           default=30  
position   string  position            default=end  
 
 
Returns 
first     variable    result     pointer of array 
 
Usage 
(array result)=&base_relative_entropy(hash base_counter_result, -output=>"show",filename=>"consensus.csv",PatLength=>3,upstream=>30,downstream=>30,position=>"end"); 
 
Input file  
csv file in text format 
 
 
Output file  
csv file in text format 
grapph file in text format 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Koya Mori(mory@g-language.org) at Institute for Advanced Biosciences Keio Univ.  
 
 
History 
Written 14 July  2001 - Koya Mori