Method 
atcgcon 
 
Classpackage  
G::Seq::Util; 
 
 
Function 
Counts the number of bases in CDS. 
 
Description 
This method calculates the atgc content of all CDS withing the genome. 
 
Requirements 
modules   
SubOpt.pm 
GD.pm 
 
applications 
none 
 
data 
none 
 
Parameters 
essential 
 
first     pointer   Genome    G's instance 
 
option 
output    string   [stdout or f]     default=stdout 
filename  string   file_name         default=cds_info.csv 
 
Returns 
first     hash    result     the result of the hash 
 
Usage 
(hash result)=&atcgcon(pointer Genome, -output=>'stdout',-filename=>'cds_info.csv'); 
 
Input file  
none 
 
 
Output file  
csv file in text format 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Koya Mori(mory@g-language.org) at Institute for Advanced Biosciences Keio Univ.  
 
 
History 
Written 23 June   2001 - Koya Mori