User Tools

Site Tools


This is an old revision of the document!

Document Center

AJAX Document Center

Double click on an entry to see its documentation.


Introduction to G-language GAE English Japanese
GCskew Basics English Japanese
GCskew Advanced English Japanese
GCskew Developer's Guide English Japanese
Codon usage English Japanese
Bacteria analysis system English Japanese
Learning Perl for genome analysis English Japanese
Using BioMOBY with G-language GAE English Japanese
Various Perl scripts English Japanese
REST Web Service for Genome Analysis English Japanese


Main API English
SubOpt API English
Rcmd API English
Messenger API English
Analysis Methods API English
GUI English (PDF)
GenomeProjector API English

Complete API

Benchmark comparison with Bioperl

Benchmark English

Architecture and Design

The Development and Design of a Generic Genome Analysis Environment: The G-language system
English Japanese

Inspire Japanese
Bluebird Japanese
Skyline Japanese
Version2 Nismo Japanese
v2roadmap Japanese
マシンへの負荷を考慮したプログラミング法 Japanese

Academic Publications about G-language System

  • "G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining", Arakawa K, Mori K, Ikeda K, Matsuzaki T, Kobayashi Y, Tomita M, Bioinformatics, 2003, 19(2):305-306 (PubMed).
This is the main article. Please cite this paper when you publish your research work using G-language System.
  • "G-language System as a platform for large-scale analysis of high-throughput omics data", Arakawa K, Tomita M, Journal of Pesticide Science, 2006, 31(3):282-288(PDF).
This is a review describing G-language System and related software packages. Please also cite this article.
  • "Computational Genome Analysis Using The G-language System", Arakawa K, Suzuki H, Tomita M, Genes, Genomes and Genomics, 2008, 2(1): 1-13 (PDF).
This review describes the algorithms implemented in G-language System, especially focusing on the identification of binding sites, analysis of genomic compositional skews, and codons.
  • "G-language genome analysis environment with REST and SOAP web service interfaces", Arakawa K, Kido N, Oshita K, Tomita M, Nucleic Acids Res., 2010, 38 Suppl:W700-705 (PubMed).
This paper describes the REST/SOAP Web services of the G-language System.

Further Reading

Review Articles
Large-scale Modeling for Systems Biology Japanese English
Visualizing Complex Omics Information Japanese English

Old versions

documents.1451918230.txt.gz · Last modified: 2016/01/04 14:37 by gaou