User Tools

Site Tools


biomobyjapanese

This is an old revision of the document!


Using BioMOBY Web Services from G-language GAE

help -w

で他のドキュメントと同じように、ウェブサービスを検索できます。

例えばKEGG関連のウェブサービスなら、

G > help -w kegg
    Found keyword "kegg" in the following web services (13 hits).

    RINGStest                               :   Testing the query for a KEGG Glycan ID given a KCF...
    convertIdentifier2KeggID                :   This service consumes an identifier from the follo...
    convertKeggGeneId2PDBId                 :   This service consumes an identifier under the KEGG...
    convertKeggGeneId2ProtId                :   This service consumes an identifier under the KEGG...
    getColoredKeggPathwayOfKeggIds          :   This service takes as input a KEGG pathway and KEG...
    getKeggCompoundsOnKeggPathway           :   This service, given a KEGG pathway, searches for a...
    getKeggIdsByKeggPathway                 :   This service, given a KEGG pathway, searches for a...
    getKeggPathwayAsGif                     :   This service, given a KEGG pathway, returns a Gif ...
    getKeggPathwaysByKeggID                 :   This service, given a KEGG identifier, attempts to...
    getPubChemSubstanceIdByKeggCompound     :   This service, given a KEGG compound, returns the a...
    getUniprotDescriptorsByKeyword          :   Gets the uniprot identifier and description from a...
    getUniprotIdentifierByGeneName          :   This service takes in a gene name, as an identifie...
    getUniprotIdentifiersByKeyword          :   Gets uniprot identifiers by keyword using the bfin...

詳細を見るには、-wに続けてサービス名を入れます。

G > help -w getKeggPathwayAsGif

   Name: getKeggPathwayAsGif

   Description:
     This service, given a KEGG pathway, returns a Gif image of the pathway if it exists.
     For example, the <Object, KEGG_PATHWAY, 'hsa00053')
     returns a diagram of the pathway 'ASCORBATE AND ALDRATE METABOLISM'.


   Input:
     pathway
                  Object:   Object
               Namespace:   KEGG_PATHWAY

   Output:
     image
                  Object:   b64_encoded_gif
               Namespace:

     Authority : bioinfo.icapture.ubc.ca
     Contact   : ekawas@mrl.ubc.ca
     Type      : Conversion
     Category  : moby
     URL       : http://bioinfo.icapture.ubc.ca:8090/mobyservices/services/getKeggPathwayAsGif
     LSID      :  urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,getKeggPathwayAsGif:2007-12-03T19-38-05Z

実行するには、ws()を使います。

  ws("getKeggPathwayAsGif", 'hsa00053'=>'KEGG_PATHWAY');
biomobyjapanese.1208156286.txt.gz · Last modified: 2014/01/18 07:44 (external edit)