Static Pathway Model Files Readme

species model
Buchnera aphidicola Bp (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
504 513 319 257 169/ 173(97.69%)
Bacillus anthracis Ames (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
5311 1007 776 675 423/ 457(92.56%)
Click Here for Accuracy Percentages for All Pathways
Buchnera aphidicola Sg (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
545 550 356 280 189/ 189(100.00%)
Bordetella bronchiseptica RB50 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4994 1038 788 669 429/ 460(93.26%)
Click Here for Accuracy Percentages for All Pathways
Blochmannia floridanus (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
583 600 397 319 204/ 222(91.89%)
Click Here for Accuracy Percentages for All Pathways
Bacillus halodurans C-125 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4066 1056 812 693 422/ 435(97.01%)
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Bradyrhizobium japonicum USDA110 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
8317 1257 995 863 521/ 555(93.87%)
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Bifidobacterium longum NCC2705 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1729 750 533 429 255/ 273(93.41%)
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Brucella melitensis 16M (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
3198 582 379 323 224/ 519(43.16%)
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Brucella suis 1330 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
3264 522 318 258 164/ 450(36.44%)
Bordetella parapertussis 12822 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4185 1011 763 644 404/ 433(93.30%)
Click Here for Accuracy Percentages for All Pathways
Bordetella pertussis Tohama I (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
3447 957 717 602 394/ 422(93.36%)
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Bacillus subtilis 168 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4106 1060 818 699 464/ 476(97.48%)
Click Here for Accuracy Percentages for All Pathways
Bacteroides thetaiotaomicron VPI-5482 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4778 912 696 583 361/ 379(95.25%)
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Coxiella burnetii RSA 493 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2009 771 534 427 270/ 291(92.78%)
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Caulobacter crescentus CB15 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
3737 1068 807 689 405/ 420(96.43%)
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Corynebacterium efficiens YS-314 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2950 944 674 574 352/ 383(91.91%)
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Campylobacter jejuni NCTC11168 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1634 816 571 496 282/ 296(95.27%)
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Chlamydophila pneumoniae AR39 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1110 558 359 285 164/ 165(99.39%)
Chlamydophila pneumoniae J138 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1070 561 362 288 166/ 167(99.40%)
Chlamydophila pneumoniae CWL029 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1052 588 394 304 165/ 166(99.40%)
Click Here for Accuracy Percentages for All Pathways
Chlamydophila pneumoniae TW-183 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1113 537 345 272 164/ 167(98.20%)
Clostridium tetani E88 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2373 799 592 497 311/ 339(91.74%)
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Chlorobium tepidum TLS (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2252 813 590 488 301/ 323(93.19%)
Click Here for Accuracy Percentages for All Pathways
Chlamydia trachomatis serovar D (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
894 580 391 300 158/ 161(98.14%)
Chromobacterium violaceum ATCC 12472 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4407 1047 834 729 484/ 523(92.54%)
Click Here for Accuracy Percentages for All Pathways
Escherichia coli CFT073 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
5379 1120 906 780 525/ 554(94.77%)
Click Here for Accuracy Percentages for All Pathways
Escherichia coli O157:H7 EDL933 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
5349 1197 972 842 545/ 566(96.29%)
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Escherichia coli K-12 MG1655 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4289 1195 968 835 579/ 579(100.00%)
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Escherichia coli O157:H7 Sakai (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
5361 1206 972 842 548/ 568(96.48%)
Click Here for Accuracy Percentages for All Pathways
Fusobacterium nucleatum ATCC 25586 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2067 804 608 514 302/ 326(92.64%)
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Gloeobacter violaceus PCC7421 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4430 945 689 587 347/ 375(92.53%)
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Haemophilus ducreyi 35000HP (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1717 715 506 403 264/ 281(93.95%)
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Helicobacter hepaticus ATCC 51449 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1875 750 543 436 283/ 301(94.02%)
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Haemophilus influenzae Rd KW20 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1709 907 664 551 358/ 359(99.72%)
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Helicobacter pylori J99 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1491 727 495 416 252/ 262(96.18%)
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Helicobacter pylori 26695 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1566 748 516 420 251/ 262(95.80%)
Click Here for Accuracy Percentages for All Pathways
Leptospira interrogans 56601 (serovar lai) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4727 175 100 66 48/ 381(12.60%)
Lactococcus lactis subsp. lactis IL1403 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2266 925 683 567 312/ 328(95.12%)
Click Here for Accuracy Percentages for All Pathways
Mycobacterium bovis subsp. bovis AF2122/97 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
3920 943 690 592 414/ 456(90.79%)
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Mycoplasma gallisepticum R (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
726 401 265 193 93/ 95(97.89%)
Mycoplasma genitalium G-37 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
480 422 267 191 88/ 88(100.00%)
Mycobacterium leprae TN (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1605 851 605 501 285/ 315(90.48%)
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Mycoplasma penetrans HF-2 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1037 564 375 290 133/ 136(97.79%)
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Mycoplasma pneumoniae M129 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
688 445 276 200 98/ 98(100.00%)
Mycoplasma pulmonis UAB CTIP (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
782 430 279 201 101/ 107(94.39%)
Mycobacterium tuberculosis CDC1551 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4187 1064 780 678 403/ 424(95.05%)
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Mycobacterium tuberculosis H37Rv (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
3869 1070 806 684 405/ 431(93.97%)
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Nitrosomonas europaea ATCC 19718 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2461 832 621 514 334/ 360(92.78%)
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Neisseria meningitidis Z2491 (serogroup A) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2065 895 663 562 334/ 346(96.53%)
Click Here for Accuracy Percentages for All Pathways
Neisseria meningitidis MC58 (serogroup B) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2025 867 635 532 329/ 339(97.05%)
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Oceanobacillus iheyensis HTE831 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
3496 967 731 617 398/ 435(91.49%)
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Pseudomonas aeruginosa PA01 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
5565 1218 944 826 499/ 517(96.52%)
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Porphyromonas gingivalis W83 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1909 699 493 405 252/ 275(91.64%)
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Photorhabdus luminescens subsp. laumondii TTO1 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4683 1026 785 672 458/ 501(91.42%)
Click Here for Accuracy Percentages for All Pathways
Prochlorococcus marinus SS120 (subsp. marinus CCMP1375) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1882 798 549 454 304/ 342(88.89%)
Click Here for Accuracy Percentages for All Pathways
Prochlorococcus marinus MED4 (subsp. pastoris str. CCMP1378) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1712 785 532 461 317/ 346(91.62%)
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Prochlorococcus marinus MIT 9313 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2265 798 569 483 326/ 356(91.57%)
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Pasteurella multocida PM70 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2014 913 671 561 372/ 391(95.14%)
Click Here for Accuracy Percentages for All Pathways
Pseudomonas putida KT2440 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
5350 1087 840 722 456/ 492(92.68%)
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Pseudomonas syringae pv. tomato DC3000 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
5471 1077 841 719 446/ 483(92.34%)
Click Here for Accuracy Percentages for All Pathways
Rhodopirellula baltica (Pirellula sp. strain 1) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
7325 971 748 639 412/ 432(95.37%)
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Rickettsia conorii Malish 7 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1374 603 385 301 142/ 149(95.30%)
Click Here for Accuracy Percentages for All Pathways
Rickettsia prowazekii Madrid E (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
834 556 357 271 133/ 138(96.38%)
Streptococcus agalactiae 2603 (serotype V) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2124 774 554 441 257/ 276(93.12%)
Click Here for Accuracy Percentages for All Pathways
Staphylococcus aureus MW2 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2632 866 634 541 343/ 360(95.28%)
Click Here for Accuracy Percentages for All Pathways
Streptococcus agalactiae NEM316 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2094 785 558 445 258/ 278(92.81%)
Click Here for Accuracy Percentages for All Pathways
Staphylococcus epidermidis ATCC 12228 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2419 843 612 514 328/ 350(93.71%)
Click Here for Accuracy Percentages for All Pathways
Shigella flexneri 301 (serotype 2a) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4180 1084 858 736 493/ 532(92.67%)
Click Here for Accuracy Percentages for All Pathways
Shigella flexneri 2457T (serotype 2a) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4068 1044 817 701 486/ 533(91.18%)
Click Here for Accuracy Percentages for All Pathways
Streptococcus mutans UA159 (serotype C) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1960 766 567 460 266/ 294(90.48%)
Click Here for Accuracy Percentages for All Pathways
Streptococcus pyogenes MGAS315 (serotype M3) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1865 728 519 423 228/ 243(93.83%)
Click Here for Accuracy Percentages for All Pathways
Streptococcus pyogenes MGAS8232 (serotype M18) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1845 719 514 418 229/ 245(93.47%)
Click Here for Accuracy Percentages for All Pathways
Streptococcus pneumoniae TIGR4 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2094 803 593 476 273/ 288(94.79%)
Click Here for Accuracy Percentages for All Pathways
Streptococcus pneumoniae R6 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2043 773 572 462 266/ 299(88.96%)
Click Here for Accuracy Percentages for All Pathways
Streptococcus pyogenes SSI-1 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1861 724 516 420 226/ 241(93.78%)
Click Here for Accuracy Percentages for All Pathways
Streptococcus pyogenes SF370 (serotype M1) (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1696 777 557 463 225/ 243(92.59%)
Click Here for Accuracy Percentages for All Pathways
Salmonella typhi Ty2 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4323 1100 887 764 527/ 563(93.61%)
Click Here for Accuracy Percentages for All Pathways
Synechococcus sp. WH 8102 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2517 804 575 508 347/ 375(92.53%)
Click Here for Accuracy Percentages for All Pathways
Thermosynechococcus elongatus BP-1 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2475 851 628 512 318/ 350(90.86%)
Click Here for Accuracy Percentages for All Pathways
Thermotoga maritima MSB8 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1846 862 622 515 292/ 305(95.74%)
Click Here for Accuracy Percentages for All Pathways
Treponema pallidum Nichols (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
1031 543 355 274 127/ 128(99.22%)
Thermoanaerobacter tengcongensis MB4T (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2588 807 589 487 297/ 322(92.24%)
Click Here for Accuracy Percentages for All Pathways
Tropheryma whipplei Twist (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
808 612 413 336 183/ 198(92.42%)
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Tropheryma whipplei TW08/27 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
783 609 403 321 178/ 199(89.45%)
Click Here for Accuracy Percentages for All Pathways
Ureaplasma urealyticum serovar 3 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
611 376 231 172 78/ 80(97.50%)
Vibrio cholerae El Tor N16961 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
3828 475 294 214 123/ 470(26.17%)
Vibrio parahaemolyticus RIMD 2210633 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4832 563 372 279 155/ 490(31.63%)
Vibrio vulnificus CMCP6 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4537 545 368 276 155/ 487(31.83%)
Wolinella succinogenes DSMZ 1740 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
2044 736 525 443 273/ 296(92.23%)
Click Here for Accuracy Percentages for All Pathways
Xanthomonas axonopodis pv. citri 306 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4312 1054 804 679 424/ 451(94.01%)
Click Here for Accuracy Percentages for All Pathways
Xanthomonas campestris pv. campestris ATCC 33913 (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4181 1051 809 685 437/ 462(94.59%)
Click Here for Accuracy Percentages for All Pathways
Yersinia pestis KIM (click here for SBML model file)
genes metabolites reactions enzymes KEGG coverage Download
4090 1075 846 723 472/ 498(94.78%)
Click Here for Accuracy Percentages for All Pathways