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species	model
Buchnera aphidicola Bp (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 504 513 319 257 169/ 173(97.69%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism Phenylalanine metabolism Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation Tetrachloroethene degradation Nitrobenzene degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system
Bacillus anthracis Ames (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 5311 1007 776 675 423/ 457(92.56%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Buchnera aphidicola Sg (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 545 550 356 280 189/ 189(100.00%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism Phenylalanine metabolism Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation Tetrachloroethene degradation Nitrobenzene degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system
Bordetella bronchiseptica RB50 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4994 1038 788 669 429/ 460(93.26%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Blochmannia floridanus (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 583 600 397 319 204/ 222(91.89%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Stilbene, coumarine and lignin biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system
Bacillus halodurans C-125 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4066 1056 812 693 422/ 435(97.01%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system
Bradyrhizobium japonicum USDA110 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 8317 1257 995 863 521/ 555(93.87%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Retinol metabolism Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Bifidobacterium longum NCC2705 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1729 750 533 429 255/ 273(93.41%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Nitrobenzene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Brucella melitensis 16M (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 3198 582 379 323 224/ 519(43.16%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products DNA polymerase Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Brucella suis 1330 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 3264 522 318 258 164/ 450(36.44%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system
Bordetella parapertussis 12822 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4185 1011 763 644 404/ 433(93.30%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Bordetella pertussis Tohama I (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 3447 957 717 602 394/ 422(93.36%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Bacillus subtilis 168 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4106 1060 818 699 464/ 476(97.48%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Bacteroides thetaiotaomicron VPI-5482 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4778 912 696 583 361/ 379(95.25%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Coxiella burnetii RSA 493 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2009 771 534 427 270/ 291(92.78%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system
Caulobacter crescentus CB15 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 3737 1068 807 689 405/ 420(96.43%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Corynebacterium efficiens YS-314 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2950 944 674 574 352/ 383(91.91%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Campylobacter jejuni NCTC11168 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1634 816 571 496 282/ 296(95.27%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation Tetrachloroethene degradation Nitrobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Chlamydophila pneumoniae AR39 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1110 558 359 285 164/ 165(99.39%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Stilbene, coumarine and lignin biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Chlamydophila pneumoniae J138 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1070 561 362 288 166/ 167(99.40%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Stilbene, coumarine and lignin biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Chlamydophila pneumoniae CWL029 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1052 588 394 304 165/ 166(99.40%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Stilbene, coumarine and lignin biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Chlamydophila pneumoniae TW-183 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1113 537 345 272 164/ 167(98.20%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Stilbene, coumarine and lignin biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Clostridium tetani E88 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2373 799 592 497 311/ 339(91.74%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Chlorobium tepidum TLS (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2252 813 590 488 301/ 323(93.19%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Chlamydia trachomatis serovar D (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 894 580 391 300 158/ 161(98.14%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Stilbene, coumarine and lignin biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Chromobacterium violaceum ATCC 12472 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4407 1047 834 729 484/ 523(92.54%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Escherichia coli CFT073 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 5379 1120 906 780 525/ 554(94.77%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Escherichia coli O157:H7 EDL933 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 5349 1197 972 842 545/ 566(96.29%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Escherichia coli K-12 MG1655 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4289 1195 968 835 579/ 579(100.00%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Escherichia coli O157:H7 Sakai (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 5361 1206 972 842 548/ 568(96.48%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Fusobacterium nucleatum ATCC 25586 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2067 804 608 514 302/ 326(92.64%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Gloeobacter violaceus PCC7421 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4430 945 689 587 347/ 375(92.53%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Retinol metabolism Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Haemophilus ducreyi 35000HP (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1717 715 506 403 264/ 281(93.95%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Helicobacter hepaticus ATCC 51449 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1875 750 543 436 283/ 301(94.02%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Haemophilus influenzae Rd KW20 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1709 907 664 551 358/ 359(99.72%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Helicobacter pylori J99 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1491 727 495 416 252/ 262(96.18%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Tetrachloroethene degradation Nitrobenzene degradation Fluorene degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Helicobacter pylori 26695 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1566 748 516 420 251/ 262(95.80%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Leptospira interrogans 56601 (serovar lai) (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4727 175 100 66 48/ 381(12.60%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism gamma-Hexachlorocyclohexane degradation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Aminophosphonate metabolism Selenoamino acid metabolism D-Alanine metabolism Starch and sucrose metabolism Nucleotide sugars metabolism Aminosugars metabolism Chondroitin / Heparan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Pyruvate metabolism Nitrobenzene degradation 1,4-Dichlorobenzene degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Butanoate metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of type II polyketide products Type II secretion system
Lactococcus lactis subsp. lactis IL1403 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2266 925 683 567 312/ 328(95.12%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Retinol metabolism Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Mycobacterium bovis subsp. bovis AF2122/97 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 3920 943 690 592 414/ 456(90.79%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system
Mycoplasma gallisepticum R (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 726 401 265 193 93/ 95(97.89%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Nitrobenzene degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Mycoplasma genitalium G-37 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 480 422 267 191 88/ 88(100.00%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Fatty acid biosynthesis (path 2) Fatty acid metabolism Biosynthesis of steroids Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism Phenylalanine metabolism Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Aminosugars metabolism Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Nitrobenzene degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Styrene degradation Butanoate metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Folate biosynthesis Porphyrin and chlorophyll metabolism Limonene and pinene degradation Nitrogen metabolism Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Mycobacterium leprae TN (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1605 851 605 501 285/ 315(90.48%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Mycoplasma penetrans HF-2 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 1037 564 375 290 133/ 136(97.79%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 2) Fatty acid metabolism Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Aminosugars metabolism Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Mycoplasma pneumoniae M129 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 688 445 276 200 98/ 98(100.00%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 2) Fatty acid metabolism Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism Phenylalanine metabolism Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Aminosugars metabolism Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Styrene degradation Butanoate metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Folate biosynthesis Porphyrin and chlorophyll metabolism Limonene and pinene degradation Nitrogen metabolism Caprolactam degradation Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Mycoplasma pulmonis UAB CTIP (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 782 430 279 201 101/ 107(94.39%) Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 2) Fatty acid metabolism Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Arginine and proline metabolism Histidine metabolism Tyrosine metabolism Phenylalanine metabolism Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Alanine metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism Benzoate degradation via CoA ligation Propanoate metabolism Styrene degradation Butanoate metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Folate biosynthesis Porphyrin and chlorophyll metabolism Limonene and pinene degradation Nitrogen metabolism Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Mycobacterium tuberculosis CDC1551 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 4187 1064 780 678 403/ 424(95.05%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Mycobacterium tuberculosis H37Rv (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 3869 1070 806 684 405/ 431(93.97%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Indole and ipecac alkaloid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Nitrosomonas europaea ATCC 19718 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2461 832 621 514 334/ 360(92.78%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Atrazine degradation Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Neisseria meningitidis Z2491 (serogroup A) (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2065 895 663 562 334/ 346(96.53%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Neisseria meningitidis MC58 (serogroup B) (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 2025 867 635 532 329/ 339(97.05%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Diterpenoid biosynthesis Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Oceanobacillus iheyensis HTE831 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 3496 967 731 617 398/ 435(91.49%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1) Fatty acid biosynthesis (path 2) Fatty acid metabolism Synthesis and degradation of ketone bodies Biosynthesis of steroids Bile acid biosynthesis Ubiquinone biosynthesis C21-Steroid hormone metabolism Androgen and estrogen metabolism Oxidative phosphorylation ATP synthesis Photosynthesis Urea cycle and metabolism of amino groups Purine metabolism Pyrimidine metabolism Glutamate metabolism Alanine and aspartate metabolism Glycine, serine and threonine metabolism Methionine metabolism Cysteine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis Lysine biosynthesis Lysine degradation Penicillins and cephalosporins biosynthesis Arginine and proline metabolism Histidine metabolism Tyrosine metabolism DDT degradation Phenylalanine metabolism gamma-Hexachlorocyclohexane degradation Benzoate degradation via hydroxylation Tryptophan metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Novobiocin biosynthesis beta-Alanine metabolism Taurine and hypotaurine metabolism Aminophosphonate metabolism Selenoamino acid metabolism Cyanoamino acid metabolism D-Glutamine and D-glutamate metabolism D-Arginine and D-ornithine metabolism D-Alanine metabolism Glutathione metabolism Starch and sucrose metabolism N-Glycan biosynthesis N-Glycan degradation O-Glycan biosynthesis High-mannose type N-glycan biosynthesis Nucleotide sugars metabolism Streptomycin biosynthesis Polyketide sugar unit biosynthesis Aminosugars metabolism Glycosaminoglycan degradation Chondroitin / Heparan sulfate biosynthesis Keratan sulfate biosynthesis Lipopolysaccharide biosynthesis Peptidoglycan biosynthesis Glycerolipid metabolism Inositol phosphate metabolism Phospholipid degradation Prostaglandin and leukotriene metabolism Glycosphingolipid metabolism Blood group glycolipid biosynthesis-lactoseries Blood group glycolipid biosynthesis-neolactoseries Globoside metabolism Ganglioside biosynthesis Pyruvate metabolism Biphenyl degradation Toluene and xylene degradation 2,4-Dichlorobenzoate degradation Tetrachloroethene degradation Nitrobenzene degradation 1,4-Dichlorobenzene degradation Fluorene degradation Carbazole degradation Glyoxylate and dicarboxylate metabolism 1,2-Dichloroethane degradation Benzoate degradation via CoA ligation Propanoate metabolism 3-Chloroacrylic acid degradation Ethylbenzene degradation Styrene degradation Butanoate metabolism C5-Branched dibasic acid metabolism One carbon pool by folate Methane metabolism Carbon fixation Reductive carboxylate cycle (CO2 fixation) Thiamine metabolism Riboflavin metabolism Vitamin B6 metabolism Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Biotin metabolism Folate biosynthesis Porphyrin and chlorophyll metabolism Terpenoid biosynthesis Limonene and pinene degradation Nitrogen metabolism Sulfur metabolism Caprolactam degradation Stilbene, coumarine and lignin biosynthesis Flavonoid biosynthesis Alkaloid biosynthesis I Alkaloid biosynthesis II Aminoacyl-tRNA biosynthesis Biosynthesis of ansamycins Biosynthesis of siderophore nonribosomal peptides Biosynthesis of type II polyketide backbone Biosynthesis of type II polyketide products Flagellar assembly RNA polymerase DNA polymerase Type III secretion system Type II secretion system Phosphatidylinositol signaling system Ubiquitin mediated proteolysis
Pseudomonas aeruginosa PA01 (click here for SBML model file)	genes metabolites reactions enzymes KEGG coverage Download 5565 1218 944 826 499/ 517(96.52%) Click Here for Accuracy Percentages for All Pathways Glycolysis / Gluconeogenesis Citrate cycle (TCA cycle) Pentose phosphate pathway Inositol metabolism Pentose and glucuronate interconversions Fructose and mannose metabolism Galactose metabolism Ascorbate and aldarate metabolism Fatty acid biosynthesis (path 1)