Method 
valid_CDS 
 
Class 
G::Seq::Eliminate; 
 
 
Function 
Extracts valid CDS. 
 
Description 
Deletes CDS with areas where ORF are overlapping    
In other words, the overlapping genes are deleted.  
By doing so, the G instance's CDS key is turned off. 
 
By &cds(key), CDS which were not deleted are extracted. 
 
Requirements 
modules   
SubOpt.pm 
 
applications 
none 
 
data 
none 
 
Parameters 
essential 
 
first     pointer   Genome          G's instance 
 
 
option 
Max       int       Max             default=10000 
Min       int       Min             default=20 
 
Returns 
first     pointer    Genome     ????? 
 
Usage 
(pointer Genome)=&valid_CDS(pointer Genome, -Max=>10000, -Min=>20); 
 
Input file  
none 
 
 
Output file  
none 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Koya Mori(mory@g-language.org) at Institute for Advanced Biosciences Keio Univ.  
 
 
History