Method 
oligomer_counter 
 
Classpackage  
G::Seq::PatSearch; 
 
Function 
Counts oligomers (by windows optionally) 
 
Description 
Counts oligomers within specified window. 
 
 
Requirements 
modules   
SubOpt.pm 
sub UniUniGrapher() 
 
applications 
none 
 
data 
none 
 
Parameters 
essential 
 
first    string    seq          pointer of sequence 
 
 
option 
window int      window size.    default= 
         
option string   [f or g]        default= 
 
Returns 
first     array    count      
second    int      count      
 
Usage 
(array count || int count) = &oligomer_counter(pointer G instance,  
                                                       string seq,window=>???, option=>????) ; 
 
Input file  
none 
 
 
Output file  
none 
 
References 
none  
 
Comments 
none 
 
Authors 
This method was written by Kazuharu Arakawa(gaou@g-language.org) at Institute for Advanced Biosciences Keio Univ.  
 
 
History 
Written 29 August  2001 - Kazuharu Arakawa 
Written 18 May     2001 - Kazuharu Arakawa