NC_002947: Pseudomonas putida KT2440

ori position (bp) ter position (bp) ori position (bp) ter position (bp)
GC-LowPass10 755 3731003 PURINE-LowPass10 2264 3747602
GC-LowPass20 755 3731003 PURINE-LowPass20 755 3747602
GC-LowPass50 755 3731003 PURINE-LowPass50 2264 3746093
GC-LowPass90 755 3732512 PURINE-LowPass90 2264 3740057
GC-LowPass95 755 3732512 PURINE-LowPass95 755 3737039
GC-LowPass99 755 3699314 PURINE-LowPass99 5282 3740057
KETO-LowPass10 47534 3740057 GC ORITER 463 3730094
KETO-LowPass20 47534 3731003 KETO ORITER 206 3740836
KETO-LowPass50 46025 3731003 PURINE ORITER 3273 3748943
KETO-LowPass90 50552 3732512 INTER GC ORITER 463 3730094
KETO-LowPass95 755 3732512 INTER KETO ORITER 206 3740836
KETO-LowPass99 755 3690260 INTER PURINE ORITER 3273 3748943
NORMGC GC ORITER 463 3731632 CAI GC ORITER 463 3730094
NORMGC KETO ORITER 206 3740836 CAI KETO ORITER 63905 3725959
NORMGC PURINE ORITER 3273 3748943 CAI PURINE ORITER 117971 3749392



genomicskew.png
GC skew in GC3/non-coding/whole genome
Fourier power spectrum
Fourier Power Spectrum
Fourier power spectrum (1 to 50Hz)
Fourier Power Spectrum (1 to 50Hz)

gcwin-gc-1000.png
GC Content
window: 1000 bp
gcwin-gc-5000.png
GC Content
window: 5000 bp
gcwin-gc-10000.png
GC Content
window: 10000 bp
gcwin-at-1000.png
AT Content
window: 1000 bp
gcwin-at-5000.png
AT Content
window: 5000 bp
gcwin-at-10000.png
AT Content
window: 10000 bp

gcwin-keto-1000.png
Keto Content
window: 1000 bp
gcwin-keto-5000.png
Keto Content
window: 5000 bp
gcwin-keto-10000.png
Keto Content
window: 10000 bp
gcwin-purine-1000.png
Purine Content
window: 1000 bp
gcwin-purine-5000.png
Purine Content
window: 5000 bp
gcwin-purine-10000.png
Purine Content
window: 10000 bp

gcskew-gc-1000.png
GC Skew
window: 1000 bp
gcskew-gc-5000.png
GC Skew
window: 5000 bp
gcskew-gc-10000.png
GC Skew
window: 10000 bp
gcskew-at-1000.png
AT Skew
window: 1000 bp
gcskew-at-5000.png
AT Skew
window: 5000 bp
gcskew-at-10000.png
AT Skew
window: 10000 bp

gcskew-keto-1000.png
Keto Skew
window: 1000 bp
gcskew-keto-5000.png
Keto Skew
window: 5000 bp
gcskew-keto-10000.png
Keto Skew
window: 10000 bp
gcskew-purine-1000.png
Purine Skew
window: 1000 bp
gcskew-purine-5000.png
Purine Skew
window: 5000 bp
gcskew-purine-10000.png
Purine Skew
window: 10000 bp

cum_gcskew-gc-1000.png
GC Skew(cumulative)
window: 1000 bp
cum_gcskew-gc-5000.png
GC Skew(cumulative)
window: 5000 bp
cum_gcskew-gc-10000.png
GC Skew(cumulative)
window: 10000 bp
cum_gcskew-at-1000.png
AT Skew(cumulative)
window: 1000 bp
cum_gcskew-at-5000.png
AT Skew(cumulative)
window: 5000 bp
cum_gcskew-at-10000.png
AT Skew(cumulative)
window: 10000 bp

cum_gcskew-keto-1000.png
Keto Skew(cumulative)
window: 1000 bp
cum_gcskew-keto-5000.png
Keto Skew(cumulative)
window: 5000 bp
cum_gcskew-keto-10000.png
Keto Skew(cumulative)
window: 10000 bp
cum_gcskew-purine-1000.png
Purine Skew(cumulative)
window: 1000 bp
cum_gcskew-purine-5000.png
Purine Skew(cumulative)
window: 5000 bp
cum_gcskew-purine-10000.png
Purine Skew(cumulative)
window: 10000 bp





(C) 2006 Institute for Advanced Biosciences, Keio University