NC_002939: Geobacter sulfurreducens PCA

ori position (bp) ter position (bp) ori position (bp) ter position (bp)
GC-LowPass10 7914 1910878 PURINE-LowPass10 3607160 1914602
GC-LowPass20 7914 1910878 PURINE-LowPass20 3607160 1914602
GC-LowPass50 7914 1910878 PURINE-LowPass50 3607160 1914602
GC-LowPass90 3259 1910878 PURINE-LowPass90 3604367 1915533
GC-LowPass95 466 1907154 PURINE-LowPass95 3607160 1914602
GC-LowPass99 466 1883879 PURINE-LowPass99 3663951 1890396
KETO-LowPass10 8845 1866190 GC ORITER 7870 1911381
KETO-LowPass20 8845 1866190 KETO ORITER 9424 1866797
KETO-LowPass50 8845 1866190 PURINE ORITER 3607710 1915085
KETO-LowPass90 9776 1867121 INTER GC ORITER 7870 1911381
KETO-LowPass95 13500 1866190 INTER KETO ORITER 9424 1866797
KETO-LowPass99 466 1882017 INTER PURINE ORITER 3607710 1915085
NORMGC GC ORITER 7870 1911381 CAI GC ORITER 7870 1911381
NORMGC KETO ORITER 9424 1866797 CAI KETO ORITER 9424 1866797
NORMGC PURINE ORITER 3607710 1915085 CAI PURINE ORITER 3607710 1916544



genomicskew.png
GC skew in GC3/non-coding/whole genome
Fourier power spectrum
Fourier Power Spectrum
Fourier power spectrum (1 to 50Hz)
Fourier Power Spectrum (1 to 50Hz)

gcwin-gc-1000.png
GC Content
window: 1000 bp
gcwin-gc-5000.png
GC Content
window: 5000 bp
gcwin-gc-10000.png
GC Content
window: 10000 bp
gcwin-at-1000.png
AT Content
window: 1000 bp
gcwin-at-5000.png
AT Content
window: 5000 bp
gcwin-at-10000.png
AT Content
window: 10000 bp

gcwin-keto-1000.png
Keto Content
window: 1000 bp
gcwin-keto-5000.png
Keto Content
window: 5000 bp
gcwin-keto-10000.png
Keto Content
window: 10000 bp
gcwin-purine-1000.png
Purine Content
window: 1000 bp
gcwin-purine-5000.png
Purine Content
window: 5000 bp
gcwin-purine-10000.png
Purine Content
window: 10000 bp

gcskew-gc-1000.png
GC Skew
window: 1000 bp
gcskew-gc-5000.png
GC Skew
window: 5000 bp
gcskew-gc-10000.png
GC Skew
window: 10000 bp
gcskew-at-1000.png
AT Skew
window: 1000 bp
gcskew-at-5000.png
AT Skew
window: 5000 bp
gcskew-at-10000.png
AT Skew
window: 10000 bp

gcskew-keto-1000.png
Keto Skew
window: 1000 bp
gcskew-keto-5000.png
Keto Skew
window: 5000 bp
gcskew-keto-10000.png
Keto Skew
window: 10000 bp
gcskew-purine-1000.png
Purine Skew
window: 1000 bp
gcskew-purine-5000.png
Purine Skew
window: 5000 bp
gcskew-purine-10000.png
Purine Skew
window: 10000 bp

cum_gcskew-gc-1000.png
GC Skew(cumulative)
window: 1000 bp
cum_gcskew-gc-5000.png
GC Skew(cumulative)
window: 5000 bp
cum_gcskew-gc-10000.png
GC Skew(cumulative)
window: 10000 bp
cum_gcskew-at-1000.png
AT Skew(cumulative)
window: 1000 bp
cum_gcskew-at-5000.png
AT Skew(cumulative)
window: 5000 bp
cum_gcskew-at-10000.png
AT Skew(cumulative)
window: 10000 bp

cum_gcskew-keto-1000.png
Keto Skew(cumulative)
window: 1000 bp
cum_gcskew-keto-5000.png
Keto Skew(cumulative)
window: 5000 bp
cum_gcskew-keto-10000.png
Keto Skew(cumulative)
window: 10000 bp
cum_gcskew-purine-1000.png
Purine Skew(cumulative)
window: 1000 bp
cum_gcskew-purine-5000.png
Purine Skew(cumulative)
window: 5000 bp
cum_gcskew-purine-10000.png
Purine Skew(cumulative)
window: 10000 bp





(C) 2006 Institute for Advanced Biosciences, Keio University