NC_000919: Treponema pallidum subsp. pallidum str. Nichols

ori position (bp) ter position (bp) ori position (bp) ter position (bp)
GC-LowPass10 2078 553308 PURINE-LowPass10 2355 557740
GC-LowPass20 2078 553308 PURINE-LowPass20 2355 557740
GC-LowPass50 2078 553308 PURINE-LowPass50 2355 558848
GC-LowPass90 2632 557463 PURINE-LowPass90 139 558294
GC-LowPass95 970 556355 PURINE-LowPass95 139 558848
GC-LowPass99 139 560787 PURINE-LowPass99 139 560510
KETO-LowPass10 3186 555801 GC ORITER 2116 557776
KETO-LowPass20 2078 556078 KETO ORITER 3305 556360
KETO-LowPass50 3186 555801 PURINE ORITER 2413 558847
KETO-LowPass90 2632 555247 INTER GC ORITER 2116 557776
KETO-LowPass95 1524 556355 INTER KETO ORITER 3305 556360
KETO-LowPass99 139 560233 INTER PURINE ORITER 2413 558847
NORMGC GC ORITER 4014 554434 CAI GC ORITER 2831 553362
NORMGC KETO ORITER 4063 558343 CAI KETO ORITER 3305 561586
NORMGC PURINE ORITER 5073 564736 CAI PURINE ORITER 2845 544979



genomicskew.png
GC skew in GC3/non-coding/whole genome
Fourier power spectrum
Fourier Power Spectrum
Fourier power spectrum (1 to 50Hz)
Fourier Power Spectrum (1 to 50Hz)

gcwin-gc-1000.png
GC Content
window: 1000 bp
gcwin-gc-5000.png
GC Content
window: 5000 bp
gcwin-gc-10000.png
GC Content
window: 10000 bp
gcwin-at-1000.png
AT Content
window: 1000 bp
gcwin-at-5000.png
AT Content
window: 5000 bp
gcwin-at-10000.png
AT Content
window: 10000 bp

gcwin-keto-1000.png
Keto Content
window: 1000 bp
gcwin-keto-5000.png
Keto Content
window: 5000 bp
gcwin-keto-10000.png
Keto Content
window: 10000 bp
gcwin-purine-1000.png
Purine Content
window: 1000 bp
gcwin-purine-5000.png
Purine Content
window: 5000 bp
gcwin-purine-10000.png
Purine Content
window: 10000 bp

gcskew-gc-1000.png
GC Skew
window: 1000 bp
gcskew-gc-5000.png
GC Skew
window: 5000 bp
gcskew-gc-10000.png
GC Skew
window: 10000 bp
gcskew-at-1000.png
AT Skew
window: 1000 bp
gcskew-at-5000.png
AT Skew
window: 5000 bp
gcskew-at-10000.png
AT Skew
window: 10000 bp

gcskew-keto-1000.png
Keto Skew
window: 1000 bp
gcskew-keto-5000.png
Keto Skew
window: 5000 bp
gcskew-keto-10000.png
Keto Skew
window: 10000 bp
gcskew-purine-1000.png
Purine Skew
window: 1000 bp
gcskew-purine-5000.png
Purine Skew
window: 5000 bp
gcskew-purine-10000.png
Purine Skew
window: 10000 bp

cum_gcskew-gc-1000.png
GC Skew(cumulative)
window: 1000 bp
cum_gcskew-gc-5000.png
GC Skew(cumulative)
window: 5000 bp
cum_gcskew-gc-10000.png
GC Skew(cumulative)
window: 10000 bp
cum_gcskew-at-1000.png
AT Skew(cumulative)
window: 1000 bp
cum_gcskew-at-5000.png
AT Skew(cumulative)
window: 5000 bp
cum_gcskew-at-10000.png
AT Skew(cumulative)
window: 10000 bp

cum_gcskew-keto-1000.png
Keto Skew(cumulative)
window: 1000 bp
cum_gcskew-keto-5000.png
Keto Skew(cumulative)
window: 5000 bp
cum_gcskew-keto-10000.png
Keto Skew(cumulative)
window: 10000 bp
cum_gcskew-purine-1000.png
Purine Skew(cumulative)
window: 1000 bp
cum_gcskew-purine-5000.png
Purine Skew(cumulative)
window: 5000 bp
cum_gcskew-purine-10000.png
Purine Skew(cumulative)
window: 10000 bp





(C) 2006 Institute for Advanced Biosciences, Keio University