http://www.g-language.org/GenomeProjector/wiki/ 2009-05-27T22:34:34+09:00 http://www.g-language.org/GenomeProjector/wiki/ http://www.g-language.org/GenomeProjector/wiki/lib/images/favicon.ico text/html 2009-01-14T04:45:39+09:00 gaou http://www.g-language.org/GenomeProjector/wiki/searching_genome_projector?rev=1231875939&do=diff Searching Genome Projector After keyword is entered in the top right search field and ENTER key is pressed, number of hits in each of the views is displayed in the corresponding tabs. Pins on the maps show the location of search results, and clicking on the pins can show detailed annotations. See the documentations on each view for the contents of detailed annotations. [Number of hits] text/html 2008-06-13T00:48:42+09:00 gaou http://www.g-language.org/GenomeProjector/wiki/sidebar?rev=1213285722&do=diff * Project Home * Genome Projector * Documentations Home * Quick Usage * Searching Genome Projector * Views * Circular Genome Map View * Genome Map View * Biochemical Pathway Map View * DNA Walk Map View * Installation text/html 2008-05-14T18:53:49+09:00 gaou http://www.g-language.org/GenomeProjector/wiki/mapping_data_on_genome_projector?rev=1210758829&do=diff Adding overlays Similar to the hybrid-satellite map of Google Maps, Genome Projector can have maps overlaid on top of regular views. Custom implementation of overlays is relatively easy in Genome Projector. Overlay is basically same as regular zoomable map. Overlay takes two zoomable maps and superimposes one on another while making the upper map semi-transparent. Therefore, when the coordinate systems are shared among the two maps, upper map adds certain information on top of another. text/html 2008-04-16T02:58:12+09:00 gaou http://www.g-language.org/GenomeProjector/wiki/installation?rev=1208282292&do=diff Installation Here we describe the instructions for setting up local copy of the minimal version of Genome Projector, which only includes working a Escherichia coli K-12 genome. This process requires a web server supporting the execution of Perl-based CGI. Following examples are based on MacOS X 10.5. text/html 2008-04-15T20:00:59+09:00 gaou http://www.g-language.org/GenomeProjector/wiki/documents?rev=1208257259&do=diff * Quick Usage * Searching Genome Projector Views * Circular Genome Map View * Overview * Displayed Objects * genes * tRNAs and rRNAs * GC content and GC skew * replication origin and terminus * Displayed Annotations